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SOAPfuse is an open source tool developed for genome-wide detection of fusion transcripts from paired-end RNA-Seq data. By comparing with previously released tools, SOAPfuse has a good performance. It is developed in perl, and only be used on linux OS. It requires about 8G memory to run whole analysis. So far, it is developed only for analysis on human being RNA-Seq data.
SOAPfuse has been published as Method article in Genome Biology, please check
http://genomebiology.com/2013/14/2/R12
The official website (*outdated) of SOAPfuse is
http://soap.genomics.org.cn/soapfuse.html
The wiki home of SOAPfuse is
https://sourceforge.net/p/soapfuse/wiki/Home
The GitHub repository of SOAPfuse Perl module is
https://github.com/Nobel-Justin/SOAPfuse_PM
Features
- a tool for detection of fusion transcripts from paired-end RNA-Seq data
- for human being RNA-Seq data
- Creates SOAPfuse-Fusion-Figures
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