SOAPdenovo2

What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit

Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow SOAPdenovo2

SOAPdenovo2 Web Site

Other Useful Business Software

Earn up to 16% annual interest with Nexo.

Let your crypto work for you

Put idle assets to work with competitive interest rates, borrow without selling, and trade with precision. All in one platform. Geographic restrictions, eligibility, and terms apply.

Get started with Nexo.

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

tfileme Posted 2013-05-20

Soapdenovo2 works perfectly.

1 user found this review helpful.

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Developers, Science/Research

User Interface

Command-line

Programming Language

C, C++

Database Environment

Flat-file

Related Categories

C++ Assemblers, C Assemblers

Registered

2012-08-01

Similar Business Software

Bitrise

Bitrise is a CI/CD platform built for mobile development, helping teams speed up builds, automate testing, and deliver high-quality apps faster. It supports native languages like Swift, Objective-C, Java, and Kotlin, as well as cross-platform frameworks including React Native, Flutter, Xamarin,...

See Software
Windsurf Editor

The Windsurf Editor is a free AI-powered IDE and AI coding assistant that accelerates development by providing intelligent code generation and agents in over 70 programming languages and more than 40 IDEs, including VSCode, JetBrains, and Jupyter Notebooks. With Windsurf, developers can write...

See Software
Eurekos

Learning management systems are good for training employees but often fail to address the unique needs of training customers & partners as well as customers' customers & partners. Eurekos is a leading European customer education specialist, offering innovative training software solutions for...

See Software
GW Apps

GW Apps – Build Powerful Business Apps Without Code. GW Apps is a secure, cloud-based no-code platform that enables businesses to create custom applications and automate workflows without programming. Designed for both business and IT teams, GW Apps combines an intuitive drag-and-drop builder...

See Software
Parasoft

Parasoft helps organizations continuously deliver high-quality software with its AI-powered software testing platform and automated test solutions. Supporting embedded and enterprise markets, Parasoft’s proven technologies reduce the time, effort, and cost of delivering secure, reliable, and...

See Software
Aikido Security

Secure your code, cloud, and runtime in one central system. Aikido’s all-in-one security platform is loved by developers and security teams alike with full security visibility, insight in what matters most, and fast/automatic vulnerability fixes. Teams get security done with Aikido thanks...

See Software