SOAPdenovo2

What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit

Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow SOAPdenovo2

SOAPdenovo2 Web Site

Other Useful Business Software

Keep company data safe with Chrome Enterprise

Protect your business with AI policies and data loss prevention in the browser

Make AI work your way with Chrome Enterprise. Block unapproved sites and set custom data controls that align with your company's policies.

Download Chrome

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

tfileme Posted 2013-05-20

Soapdenovo2 works perfectly.

1 user found this review helpful.

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Developers, Science/Research

User Interface

Command-line

Programming Language

C, C++

Database Environment

Flat-file

Related Categories

C++ Assemblers, C Assemblers

Registered

2012-08-01

Similar Business Software

Bitrise

Bitrise is a CI/CD platform built for mobile development, helping teams speed up builds, automate testing, and deliver high-quality apps faster. It supports native languages like Swift, Objective-C, Java, and Kotlin, as well as cross-platform frameworks including React Native, Flutter, Xamarin,...

See Software
Windsurf Editor

The Windsurf Editor is a free AI-powered IDE and AI coding assistant that accelerates development by providing intelligent code generation and agents in over 70 programming languages and more than 40 IDEs, including VSCode, JetBrains, and Jupyter Notebooks. With Windsurf, developers can write...

See Software
Hostinger Horizons

Hostinger Horizons is the perfect vibe coding tool, letting you build websites and apps based on an idea or a feeling. Simply describe what you want, and our AI acts as your personal designer and developer, creating a complete, mobile friendly project instantly. Horizons is built to create...

See Software
TeamDesk

TeamDesk is the leading AI-Powered Low-Code platform for creating powerful and flexible web-based databases with no-coding. AI-Assisted Development streamlines database design, no technical skills required. TechRadar named TeamDesk as the best database platform of the year. TeamDesk...

See Software
Eurekos

Learning management systems are good for training employees but often fail to address the unique needs of training customers & partners as well as customers' customers & partners. Eurekos is a leading European customer education specialist, offering innovative training software solutions for...

See Software
GW Apps

GW Apps – Build Powerful Business Apps Without Code. GW Apps is a secure, cloud-based no-code platform that enables businesses to create custom applications and automate workflows without programming. Designed for both business and IT teams, GW Apps combines an intuitive drag-and-drop builder...

See Software