Download
-- About snpSniffer --
snpSniffer is a genotype based sample integrity checking tool for next generation sequencing data. It ensures no sample mixups have occurred by checking genotype concordance of carefully curated genomic loci. It currently works on whole genome, exome and RNA-Seq data.
Identifying mixups involves 3 steps
1. Generate the genotypes in a vcf format at specific genomic loci
2. Adding the genotypes generated to a flat file "database.ini" provided
3. Compare the genotypes for samples of interest, examine the snpSniffer output and infer if any mixups occurred
All the above steps can be run using snpSniffer
Follow snpSniffer
Other Useful Business Software
Earn up to 16% annual interest with Nexo.
Put idle assets to work with competitive interest rates, borrow without selling, and trade with precision. All in one platform.
Geographic restrictions, eligibility, and terms apply.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of snpSniffer!
