MOVED TO GITHUB: https://github.com/noporpoise/seq-align

An implementation of the Smith-Waterman local sequence alignment algorithm.

See our sister project global alignment using Needleman-Wunsch:
http://sourceforge.net/projects/needlemanwunsch/

Features

  • Affine gap penalties
  • Coloured ouput
  • Reads FASTA, FASTQ and plain sequence files (inc. gzip'ed files)
  • Preset DNA/Protein substitution matrices (PAM/BLOSUM etc)
  • Can load penalty substitution matrices
  • Portable C code that can be used in other bioinformatics projects

Project Samples

Local alignment in action!

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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SmithWaterman Web Site

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Additional Project Details

Operating Systems

Linux, BSD, Mac

Intended Audience

Science/Research, Education

User Interface

Console/Terminal, Command-line

Programming Language

C++, C

Related Categories

C++ Bio-Informatics Software, C Bio-Informatics Software

Registered

2011-12-14
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