Single-cell RNA-seq assembly Files

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 Release of scRNAss version 1.0
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scRNAss is an efficient trascriptome assembler for single-cell RNA-seq data. 
It assembles transcripts from either single-end or paired-end reads using reference genome and transcriptome, and also accurately estimates their abundances. 
  
scRNAss works in two steps. 
1) scRNAss_build generates index files using reference genome and transcriptome;
2) scRNAss then take as input single-cell RNA-seq reads and the index files to assemble expressed transcripts and estimate their abundances;
Finally, it outputs all assembled candidate transcripts in GTF format.

This software is free to use, modify, redistribute without any restrictions, except including the license provided with the distribution.