Shiny CGH

Shiny CGH for Gene discovery:


https://arraycgh.shinyapps.io/Shiny_CGH/

Shiny CGH for survival analysis:


https://arraycgh.shinyapps.io/Shiny_CGH_Survival/

Shiny CGH is a data mining tool for cancer researchers interested in the structural and copy number changes that happen in cancer genomes.

Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However, current tools focus on individual gene queries rather than chromosomal and region-based queries more relevant to some researchers. Shiny CGH creates interactive CNV frequency, GISTIC-style and breakage frequency plots from public (or your own) data. Shiny CGH is written in R and Perl and can be deployed online using ShinyApps.io .

Shiny CGH is available under the GNU public license (GPL-3).

Check the Wiki for details on how to run your own Shiny CGH instance!