seqdiva

Sequence Diversity Analysis - SeqDivA version 1.0 is a python-based tool with a friendly GUI designed for Linux and Mac OS.

Utility: Run alignment algorithms (water, needle, and blast) to compare all-vs.-all protein, DNA, and RNA sequences. SeqDivA provides similarity, identity, and bit-score matrixes and dot plots to explore/illustrate the diversity (homology degree) of the sequences, enabling the delimitation of the twilight zone.

Installation:

- Download SeqDivA
- decompress the “.zip or tar.gz” file
- Load the graphical interface by executing python SeqDivA.py. Python 3.7 is recommended.

Authors:
- Evys Ancede-Gallardo (eancedeg@gmail.com), Programa de Doctorado en Fisicoquímica Molecular, Facultad de Ciencias. Exactas, Universidad Andrés Bello, Chile.
- Guillermin Agüero-Chapin (gaguero@gmail.com), CIIMAR- Centro Interdisciplinar de Investigação Marinha e Ambiental, University of Porto. Portugal

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