Download Latest Version SEM-bsp_v0.1.zip (1.0 MB)
Email in envelope

Get an email when there's a new version of SEM_bestShortestPath

Home
Name Modified Size InfoDownloads / Week
README.txt 2015-03-05 1.8 kB
0
SEM-bsp_v0.1.zip 2015-03-05 1.0 MB
0
Totals: 2 Items   1.0 MB 0 
########################
# SEM_bestShortestPath #
########################

Copyright (c) 2014-2015 Daniele Pepe, Fernando Palluzzi, Mario Grassi

1. METHOD REFERENCE.

SEM BEST SHORTEST PATHS FOR THE CHARACTERIZATION OF DIFFERENTIALLY EXPRESSED GENES

Eleventh International Meeting on Computational Intelligence methods for
Bioinformatics and Biostatistics, CIBB 2014

Daniele Pepe (1), Fernando Palluzzi (2), Mario Grassi (1)

(1) Università di Pavia
    Department of Brain and Behavioral Sciences
(2) Politectico di Milano
    Department of Electronics, Information and Engineering

Contacts: fernando.palluzzi@polimi.it
          danielepepe84@gmail.com


1. LICENSE.

    This file is part of SEM-bsp - SEM_bestShortestPath.

    SEM-bsp is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    SEM-bsp is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with SEM-bsp.  If not, see <http://www.gnu.org/licenses/>.


2. RUN SEM_bestShortestPath

1) Start R
2) Install packages lavaan, igraph, KEGGREST, KEGGgraph:
    source("http://bioconductor.org/biocLite.R")
	biocLite("lavaan", "igraph", "KEGGREST", "KEGGgraph")
3) Open the script SEM-bsp_v0.1/Example_script_cibb.R
4) Set the working directory to the folder containing the script (../SEM-bsp_v0.1)
Source: README.txt, updated 2015-03-05