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Name Modified Size InfoDownloads / Week
Parent folder
simulate-me.sh 2021-05-12 1.6 kB
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mim2-v206.jar 2021-05-11 673.3 kB
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SexInfo.txt 2021-05-11 26 Bytes
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README.txt 2021-05-11 1.2 kB
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mySNP.snp 2021-05-11 25 Bytes
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dsim.rr_LDjump-LOESS-0.1-sex-mimicree2.txt 2021-05-11 45.9 kB
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migration.txt 2021-05-11 20 Bytes
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miniHaplo.tab 2021-05-11 9.7 kB
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Totals: 8 Items   731.7 kB 0 
#Anna Maria Langmüller
#Vetmeduni Vienna
#05/2021
#Secondary E&R Sim
#README: simulate-me


SexInfo.txt
	SexInfo file for MimicrEE2
	50 % males, 50 % females
	no hermaphrodites
	no selfing
	minimum count for males & females = 1

dsim.rr_LDjump-LOESS-0.1-sex-mimicree2.txt
	D. simulans recombination map in cM/Mb
	sex-specific recombination (no recombination in males)
	Details regarding the recombination map can be found in: doi:10.1093/gbe/evz082

migration.txt
	Migration file for MimicrEE2
	In generation 1 of the secondary E&R, 150 evolved haplotypes replace 150 non-adapted haplotypes
	Admixture in dilution experiments was regulated via migration files 

mim2-v206.jar 
	MimicrEE2 executable: https://doi.org/10.1371/journal.pcbi.1006413
	MimicrEE2 walkthrough & manual: https://sourceforge.net/p/mimicree2/wiki/Home/

miniHaplo.tab
	Dummy haplotype file containing 300 diploid individuals, and 10 SNPs

mySNP.snp
	Dummy selection regime
	Allele C at position 363 on chromosome 2L is positively selected with s=0.085 and h=0.5

simulate-me.sh
	Example code how to run forward simulations with MimicrEE2
	one non-dilution example & one dilution example
Source: README.txt, updated 2021-05-11