SciXMiner Files

Extension Packages: 

* Asphalt
  (image processing and feature extraction for segmentation of grains in asphalt samples,
  ''Images and Videos'' must be installed)
  asphalt_*.zip

  Algorithms described in: 
  REISCHL, M.; WITTENBERG, A.; KARCHER, C.; MIKUT, R.: Asphalt Image Miner: 
  Ein Werkzeug zur automatischen Quantifizierung der Gesteinskörnungen in Asphaltproben. 
  at - Automatisierungstechnik (2014), 62, pp. 676-683 (in German only).

* DaMoQ (Data and Model Quality)  - preliminary version 
  (extended measures and visualization to evaluate the quality of data and regression models)

  damoq_*.zip

  Algorithms described in: 
  Doneit, W.; Mikut, R.; Gröll, L.; Pychynski, T. & Reischl, M. 
  DaMoQ: Eine Open-Source-MATLAB-Toolbox zur Bewertung von Daten- und Modellqualität in Regressionen. 
  at-Automatisierungstechnik, 2017, 65, pp. 207-2018 (in German only).


* EmbyroMiner 
  (tracking of 3D objects, mainly in embryogenesis, successor of the Tracking extension)

  embryominer_*.zip

  Algorithms described in: 
  SCHOTT, B.; TRAUB, M.; SCHLAGENHAUF, C.; TAKAMIYA, M.; ANTRITTER, T.; BARTSCHAT, A.; LÖFFLER, K.; BLESSING, D.; OTTE, J. C.;  
  KOBITSKI, A. Y.; NIENHAUS, G. U.; STRÄHLE, U.; MIKUT, R. & STEGMAIER, J. 
  EmbryoMiner: A New Framework for Interactive Knowledge Discovery in Large-Scale Cell Tracking Data of Developing Embryos. 
  PLoS Computational Biology, Public Library of Science, 2018, 14(4), e1006128

* Forecasting 
  (different time series forecasting methods with a focus on special needs of energy time series) 

  foecasting_*.zip

  Algorithms described in: 

  GONZÁLEZ ORDIANO, J. Á.: New Data-Driven Probabilistic Forecasting Methods with Applications in Energy Systems. 
  PhD Thesis, Karlsruher Institut für Technologie (KIT), 2019.

  GONZÁLEZ ORDIANO, J. Á.; GRÖLL, L.; MIKUT, R.; HAGENMEYER, V.: Probabilistic Energy Forecasting using 
  the Nearest Neighbors Quantile Filter and Quantile Regression. 
  International Journal of Forecasting (2019), in press.

  This toolbox is supported by the Helmholtz Association under the Joint Initiative 
  ”Energy System 2050— A Contribution of the Research Field Energy”. 

* Images and Videos 
  (image and video processing incl. feature extraction)

  imvid_*.zip

  Algorithms described in: 
  J. Stegmaier, R. Alshut, M. Reischl, and R. Mikut. Information fusion of image analysis, video
  object tracking, and data mining of biological images using the open source matlab toolbox gait-cad.
  Biomedizinische Technik (Biomedical Engineering), 57 (S1):458–461, 2012


* Peptides
  (feature extraction and peptide optimization based on amino-acid ditsributions and chemical descriptors)
  peptides_*.zip
 
  Algorithms described in: 
  MIKUT, R.: Computer-based Analysis, Visualization, and Interpretation of Antimicrobial Peptide
  Activities. Methods in Molecular Biology 618 (2010), pp. 287–299.


* Road state   - preliminary version 
  (characterization of road states on the basis of kinematic vehicle sensors)

  road_state_*.zip

  Algorithms described in: 
  MASINO, J.; THUMM, J.; LEVASSEUR, G.; FREY, M.; GAUTERIN, F.; MIKUT, R. & REISCHL, M.:  
  Characterization of Road Condition with Data Mining Based on Measured Kinematic Vehicle Parameters.
  Journal of Advanced Transportation, e8647607, 2018



Installation: 
Each zipped toolbox has to be extracted in the directory application_specials of the SciXMiner
directory. The subdirectory structure must be preserved, leading to a new subdirectory embryominer etc.

Remark:
The extenzion toolbox ZebrafishMiner was supported only until the version 2019a.