3DScape Files

3DScape and 3DScapeCS are developed for 3D network visualization for Cytoscape, the differences are mainly the renderer. 
3DScape uses a renderer implemented using VTK, which is capable of displaying 3D networks in Microsoft Windows and Linux. However, 3DScape freezes in Mac OSX, due to the Java wrapping for VTK is expected to be launched from the main thread in Swing, which is also required for Cytoscape GUI. 
3DScapeCS uses a standalone renderer called Ubigraph, which features multilevel layout, dynamic coarsening, XMLRPC protocol. However, Ubigraph can only run on Mac OSX and Linux. 
Besides the renderer, 3DScapeCS also provides more features such as motion network and node/edge animation generation. The XMLRPC protocol is also used for providing multiple parallel 3D views. 

Please visit 3DScapeCS homepage http://scape3d.sourceforge.net/ to see details.