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Name Modified Size InfoDownloads / Week
Parent folder
prokkaSpecificDB_genus_HQ_20150729.tar.gz 2015-08-04 133.8 MB
0
prokkaSpecificDB_genus_20150729.tar.gz 2015-08-04 2.1 GB
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README.txt 2015-08-04 1.3 kB
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commands for 18 Strep stains.pdf 2015-03-26 1.3 MB
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Supplementary Information.pdf 2014-11-25 1.1 MB
0
scripts.zip 2014-11-24 62.3 kB
0
Totals: 6 Items   2.2 GB 0 
MyPro is built and delivered as a tailored solution for prokaryotic genome assembly and annotation. On a basis of BioLinux.

a, How to run?

	1, MyPro20141124.ova
	   
	   Use VirtualBox(https://www.virtualbox.org/) or VMware(http://www.vmware.com/tw) to import MyPro.ova.
	   
	   Mypro download link. http://sb.nhri.org.tw/MyPro/index.html
	
	2, scripts.zip
	   
	   To install all related tools, and use python scripts to run.
	   reference: Supplementary Information.pdf, page. 8.

b, To update Prokka's genus database:
   
   122 high-quality reference genomes (74 genus, July 2015) were used to built a genus db (prokkaSpecificDB_genus_HQ_20150729.tar.gz).
   In addition, all RefSeq bacterial genomes (656 genus, July 2015) were used to built a genus db (prokkaSpecificDB_genus_20150729.tar.gz).
   
   You can download and unzip one of the above-mentioned files to copy all of them to /MyTools/Tools/prokka-1.10/db/genus.

For more information, please read the 'Supplementary Information.pdf'. Please note that "species" in page 5 should be corrected to "genera", and "speciesA" to "genusA".

This work has been published in Journal of Microbiological Methods (9 April 2015).
http://www.sciencedirect.com/science/article/pii/S0167701215001207
Source: README.txt, updated 2015-08-04