SAM tools

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format.

The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

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License

BSD License, MIT License

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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Developers

User Interface

Command-line, Curses/Ncurses

Programming Language

Perl, C

Related Categories

Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2008-11-25

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