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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format.

The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

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Categories

Bio-Informatics

License

BSD License, MIT License

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SAM tools Web Site

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  • thevjp Posted 2009-12-28
    Very buggy. Coding style is obfuscated.
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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Science/Research, Developers

User Interface

Command-line, Curses/Ncurses

Programming Language

Perl, C

Related Categories

Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2008-11-25
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