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SAMMate-1.0-beta2-WIN.zip 2010-04-01 41.8 MB
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=	   SAMMate 2.7.4 release 	  		=
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New features: 
* SASeq's output format has been updated to include a new RPKM field.
* The edgeR function is compatiple with R-2.15.2. The "Path of Rscript.exe" can be set to "C:\Program Files\R\R-2.15.2\bin\Rscript.exe" to call R-2.15.2.
* For MAC, the field can be set to /usr/bin/Rscript to call R.
* SASeq transcriptome quantificaiton algorithm now processes paired-end and junction reads.
* RAEM transcript quantification algorithm now processes junction reads.
* The read count information has been improved using junction reads.

Bug fixes
* The edgeR input is now normalized using the R function calcNormFactors.
* Fixed edgeR functionality, SAMMate is now compatible with R 2.14

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=	   SAMMate 2.7 release 	  		        =
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New features: 
* New algorithm SASeq for both oneStep and iterative procedures.
* Deprecate iQuant algorithm (replaced with SASeq algorithm). 

Bug fixes:
* Fixed SAM parsing
Source: README.txt, updated 2013-02-14