riboshape

Riboshape is a suite of algorithms to predict ribosome footprint profile shapes from transcript sequences. It applies kernel smoothing to codon sequences to build predictive features, and uses these features to builds a sparse regression model to predict the ribosome footprint profile shapes.

Reference: Liu, T.-Y. and Song, Y.S. Prediction of ribosome footprint profile shapes from transcript sequences. Proceedings of ISMB 2016, Bioinformatics, Vol. 32 No. 12 (2016) i183-i191.

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Additional Project Details

Intended Audience

Science/Research

Programming Language

MATLAB

Related Categories

MATLAB Bio-Informatics Software, MATLAB Statistics Software

Registered

2016-05-09

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