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This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format).
Features
- sequence variation identification
- genome consensus sequence building
- genome modification
- genome comparison
- genome annotation
- building genome coordinate conversion between different genome assembly versions
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License
Academic Free License (AFL), Creative Commons Attribution Non-Commercial License V2.0Follow RGAAT
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