reg_stack

reg_stack is an extension to the open source project, NiftyReg, for the coregistration of a series of 2D images representing a 3D block tissue subjected to histological serial sectioning. The software performs a series of nonlinear image transformations across a kernel of user-specified size to restore data continuity, as the sectioning process results in misalignments and distortions.

The NiftyReg package also includes optimizations for parallelization on either the CPU or GPU. reg_stack leverages this feature and extends it to include support for running simultaneous instances of reg_f3d (NiftyReg) on multiple GPUs.

Features

Serial image registration
Histology registration
GPU optimized
Multi-GPU support

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