raxmlGUI

RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/

raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood.

A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0

Features

*NEW VERSION 2.0 NOW AVAILABLE: https://antonellilab.github.io/raxmlGUI/*
*version 1.5* adds the possibility to run analyses through CIPRES Science Gateway
The GUI includes RAxML executables
Multiplatform compatibility (Mac OS, Windows, Linux)
Requires Python 2.6, 2.7
Intuitive interface for data partitioning, and outgroup selection
Model selection for DNA, amino acid, binary, and multistate alignments
Automatic conversion NEXUS to PHYLIP (and vice versa)
Import FASTA files
Ancestral state reconstruction
"Bootstopping" function (Pattengale et al. 2010)
Interactive exclusion of sites
Combining multiple alignments with automatic partitioning
Interactive definition of topological constraints
Robinson-Foulds pairwise distances
Per-site likelihoods

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License

GNU General Public License version 2.0 (GPLv2)

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raxmlGUI Web Site

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Science/Research

User Interface

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2010-03-02

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