r8s download | SourceForge.net

Add a Review

Downloads: 42 This Week

Last Update: 2016-05-24

Download

Get an email when there's a new version of r8s

This package implements several methods to infer divergence times on a molecular phylogeny, using penalized likelihood, maximum likelihood and nonparametric rate smoothing methods. It also implements miscellaneous tree and character evolution models and tests.

Project Activity

See All Activity >

Follow r8s

r8s Web Site

Other Useful Business Software

Get the most trusted enterprise browser

Chrome Enterprise's advanced, built in security helps IT teams prevent breaches before they happen.

Download Chrome

Rate This Project

User Reviews

Be the first to post a review of r8s!

Additional Project Details

Registered

2016-03-15

Report inappropriate content

Recommended Projects

DFE-alpha
DFE-alpha was initially written to estimate the distribution of fitness effects (DFE) of new deleterious mutations using within-species nucleotide polymorphism data. It was subsequently extended to estimate the rate of adaptive molecular evolution, and then to infer the rate and fitness effects...
est-sfs
est-sfs implements a maximum likelihood method to infer the unfolded site frequency spectrum (the uSFS) and ancestral state probabilities for DNA sequence data. The uSFS is a vector of counts of nucleotide sites with x derived allele copies in a sample of gene copies from a population. est-sfs...
AKtoolbox
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for...
SDE Toolbox
A MATLAB package to simulate sample paths of the solution of a Itô or Stratonovich stochastic differential equation (SDE), compute statistics and estimate the parameters from data. A note of caution: SDE Toolbox is no more developed but it's still downloadable. Its inferential capabilities...
NullAllEst
NullAllEst is the implementation of a maximum likelihood algorithm to estimate the frequency of a null allele in microsatellite genetic data. A Markov Chain Monte Carlo simulation is used to solve the likelihood function.