r8s download | SourceForge.net

Add a Review

Downloads: 49 This Week

Last Update: 2016-05-24

Download

Get an email when there's a new version of r8s

This package implements several methods to infer divergence times on a molecular phylogeny, using penalized likelihood, maximum likelihood and nonparametric rate smoothing methods. It also implements miscellaneous tree and character evolution models and tests.

Project Activity

See All Activity >

Follow r8s

r8s Web Site

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

The database for AI-powered applications.

MongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.

Start Free

Rate This Project

User Reviews

Be the first to post a review of r8s!

Additional Project Details

Registered

2016-03-15

Report inappropriate content

Recommended Projects

DFE-alpha
DFE-alpha was initially written to estimate the distribution of fitness effects (DFE) of new deleterious mutations using within-species nucleotide polymorphism data. It was subsequently extended to estimate the rate of adaptive molecular evolution, and then to infer the rate and fitness effects...
est-sfs
est-sfs implements a maximum likelihood method to infer the unfolded site frequency spectrum (the uSFS) and ancestral state probabilities for DNA sequence data. The uSFS is a vector of counts of nucleotide sites with x derived allele copies in a sample of gene copies from a population. est-sfs...
AKtoolbox
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for...
SDE Toolbox
A MATLAB package to simulate sample paths of the solution of a Itô or Stratonovich stochastic differential equation (SDE), compute statistics and estimate the parameters from data. A note of caution: SDE Toolbox is no more developed but it's still downloadable. Its inferential capabilities...
NullAllEst
NullAllEst is the implementation of a maximum likelihood algorithm to estimate the frequency of a null allele in microsatellite genetic data. A Markov Chain Monte Carlo simulation is used to solve the likelihood function.