QuickMIRSeq

We designed and implemented a pipeline for fast and accurate quantification of both known miRNAs and isomiRs by joint processing multiple samples. QuickMIRSeq reconciles its implementation with the unique nature of miRNAs.All analyses results are organized in a user friendly manner, accessible via a web interface, and can be drilled down interactively by investigators or analysts to conduct further investigation and discovery. QuickMIRSeq is a powerful and flexible open source tool for accurate quantification of known miRNAs/isomiRs.

The software package, and the test run results for miRNA-seq dataset GSE64977(human), GSE65920(mouse) and GSE60900(rat) can be downloaded directly from https://sourceforge.net/projects/quickmirseq/files/, and are also available online https://baohongz.github.io/QuickMIRSeq/

Features

Joint mapping of multiple samples
Strand aware
Quantification of both miRNAs and isomiRs
Accurancy and reliablity of detected miRNAs
User friendly summary report

Project Samples

Project Activity

See All Activity >

Follow QuickMIRSeq

QuickMIRSeq Web Site

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.

Start Free

Rate This Project