Download
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.
Features
- Simulates Picornavirus replication error and copy-choice recombination
- Represents genotypes, cell populations, and quasispecies cloud
- Allows user control of parameters: MOI, replication error rate, recombination rate, generational growth rate, burst size, number of passages, number of cells, fitness acceleration, Mahoney mutational synergy
- Reports population diversity, average fitness, neurovirulence, Mahoney resemblence
Categories
Bio-InformaticsLicense
GNU General Public License version 3.0 (GPLv3)Follow Virus QSP Modeling
Other Useful Business Software
Our Free Plans just got better! | Auth0
You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of Virus QSP Modeling!