PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by
D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract).

*Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate *

*An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials *

Features

  • Updated Manual and example input files
  • Cross platform compatibility (Unix, Mac OS, Windows)

Project Samples

Rates-through-time plots

Project Activity

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Categories

Scientific/Engineering

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Programming Language

Python, S/R

Related Categories

Python Scientific Engineering, S/R Scientific Engineering

Registered

2013-05-07
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