Download Latest Version
predator-etch-i386.tar.gz (512.3 kB)
Get an email when there's a new version of PyMod
| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| Linux | 2014-10-01 | ||
| Windows | 2014-09-12 | ||
| Mac | 2014-09-12 | ||
| readme.txt | 2014-09-12 | 1.3 kB | |
| PyMod_Manual.pdf | 2014-09-12 | 1.1 MB | |
| Totals: 5 Items | 1.1 MB | 0 | |
=PyMod= Sequence similarity searches, multiple sequence-structure alignments, and homology modelling within PyMOL ==Overview== A simple and intuitive interface, PyMod, between the popular molecular graphics system PyMOL and several other tools (i.e., BLAST, ClustalW, Muscle, CEalign and MODELLER) has been developed, to show how the integration of the individual steps required for homology modelling and sequence/structure analysis within the PyMOL framework can hugely simplify these tasks. Sequence similarity searches, multiple sequence and structural alignments generation and editing, and even the possibility to merge sequence and structure alignments have been implemented in PyMod, with the aim of creating a simple, yet powerful tool for preliminary analysis and building of homology models. ==How to use PyMod== A help manual (PDF format) can be found here, alternatively you can follow the online video tutorial. ==Citation== If you find PyMod useful for your research, please please please do not forget to cite: Bramucci E, Paiardini A, Bossa F, Pascarella S. PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S2. ==License== LGPL