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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Protein Compression | 2015-05-18 | ||
| readme.txt | 2015-05-18 | 1.3 kB | |
| Totals: 2 Items | 1.3 kB | 0 |
************************************************************************ CURIPS: Compression Using Redundancy In large Protein Sequence dataset CURIPS is a dictionary based lossless compression scheme for identifying the long range repetitions in large protein data set so as to reduce the memory foot print. ************************************************************************************************ The newly developed algorithm is based on the existing algorithm COMRAD -COMpression of RedundAncy of Dna (Shanika et al, version 2.0.2, 2011) The Department of Computational Biology & Bioinformatics, University of Kerala, Thirvananthapuram, Kerala modified the COMRAD algorithm so as to compatible for Protein sequences Please send bug reports, comments etc. to "bijijomy@gmail.com". ---------------------------------------------------------------- Requirements for running CURIPS: 1. Must have a Linux machine. 2. Python to run tottime.py. 3. Test files may be downloaded from ftp://ftp.ncbi.nlm.nih.gov/refseq/release/bacteria/ ftp://ftp.ncbi.nlm.nih.gov/refseq/release/vertebrate_mammalian/ ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plant/ ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plasmid/ ftp.ncbi.nlm.nih.gov/genomes/