Download Latest Version Primer Designer v1.7 (44.0 kB) Get Updates
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primer-design-v1.7.tar.gz 2012-07-18 44.0 kB
README 2012-07-18 3.8 kB
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VERSION: 1.7 [License]:-------------------------------------------------------------------- Copyright (C) 2010-2012 Victor Khangulov - Johns Hopkins University This file is part of Primer Design Tool. Primer Design Tool is a free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <> [Creator]:-------------------------------------------------------------------- Victor Khangulov (Johns Hopkins University) [Project Website]:------------------------------------------------------------ [Description]:---------------------------------------------------------------- This is a program to help BGME students automatically create primers and generate primer sheets for the database. [System Requirements]:-------------------------------------------------------- The following requirements are describing the system that I am currently running. You may be able to get away with older (or newer) versions of packages. Python 2.6.4 Tkinter [Usage]:---------------------------------------------------------------------- Execute Because this is a GUI (Tkinter), if you are using this over ssh, then make sure that the X-server is running. [Release Notes]:-------------------------------------------------------------- 2012-07-18: v1.7 * Added automatic check for updates 2012-07-16: v1.6 * Added scrollbars to the dialogs to allow for scrolling of the main windows on systems where resolution cuts off visibility * Modified handling of the deletions in the residue sequence to be generic. Now user can pass a string in the format: "4,5,44-49" to indicate which of the residues are missing in the protein sequence. 2012-07-02: v1.5, v1.4 * Fixed error when mutating to residues with a single codon, i.e. M and W 2011-10-03: v1.3 * Changed primer loc to be text not integer 2011-03-23: v1.2 * Updated license information * Added svn keywords to the file headers * Updated the website to point to the wiki 2011-02-08: v1.1 - Fixed bugs in v1.0 * Fixed crash when primer is designed to go past either of the protein terminals. * Added re-sizing of the sequence text boxes to accomodate longer primers. 2011-01-31: v1.0 - First stable release * Fixed incorrect iveralling residue display * Changed nonspecific binding message to display True/False * Changed default output filename to display all mutations in sequential order. 2010-11-11: v0.0.8 * Improved interface * (Bug:3105672): Selecting other background, then regular one crashes program * (Bug:3105674): Change glycerol stock to primer location * (Bug:3105686): Add selection of the current codon * (Bug:3105687): Add GC content to the summary page * (Bug:3105689): Display residues covered on the summary page * (Bug:3105690): Check for poly A,T,G,C * (Bug:3105692): Implemented a check for non-specific binding * (Bug:3105695): Add table 5 for items flagged in summary checks * (Bug:3105694): Space added to prot seq in the output file when incomplete codon is present on the end (3'). 2010-11-07: v0.0.7 Added D+VIAGLA and D+NVIAGLA backgrounds to 2010-11-05: v0.0.6 Initial stable release.
Source: README, updated 2012-07-18