Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing.
The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .

Features

  • automatic construction of protein-protein interaction networks

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow PPIXpress

PPIXpress Web Site

Other Useful Business Software
Enterprise-grade ITSM, for every business Icon
Enterprise-grade ITSM, for every business

Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity.

Freshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
Try it Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of PPIXpress!

Additional Project Details

Operating Systems

Linux, Mac, Windows

Languages

English

Intended Audience

Healthcare Industry, Science/Research

User Interface

Command-line, Console/Terminal, Java Swing

Programming Language

Java

Related Categories

Java Molecular Science Software, Java Bio-Informatics Software, Java Medical Software

Registered

2015-02-26