pop.py download | SourceForge.net

Pop.py is a simulator of populations. Originally concieved to track the spread of words across language groups, pop.py can simulate any type of population, from schooling fish to n-dimensional celluar automata.

Features

polymorphic data container (MemUnit)
simple design
easy extensibility
fast integer indexing for data
separate param data type

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Languages

English

User Interface

Console/Terminal, Tk, Web-based

Programming Language

Registered

2010-08-04

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SimulaTE
SimulaTE allows to simulate arbitrary complex landscapes of transposable elements (TEs). Additionally reads may be simulated using the genomes of all indivdiuals in the population as template. Reads may be simulated using different sequencing technologies (PacBio, Illumina paired-ends) and strategies (sequencing individuals and pooled populations). SimulaTE will greatly aid in evaluating the suitability of different approaches for estimating TE abundance within populations and to test whether given genomic resources, such as a reference genome or a TE database (a fasta file containing consensus sequences of TEs), are suitable for TE identification. Manual https://sourceforge.net/p/simulates/wiki/Home/#manual Walkthrough https://sourceforge.net/p/simulates/wiki/Home/#walkthrough Validation https://sourceforge.net/p/simulates/wiki/Home/#validation