Polymorphic SSR retrieval

Polymorphic SSR from NGS data

Brought to you by: cocantarella

Add a Review

Downloads: 0 This Week

Last Update: 2015-10-12

Download

Get an email when there's a new version of Polymorphic SSR retrieval

Perl package developed to call length polymorphisms in perfect microsatellites exploiting NGS data. PSR is divided in two modules: PSR_read_retrieval identifies all the reads that cover the full-length of perfect microsatellites; PSR_poly_finder detects both heterozygous and homozygous alleles at each microsatellite locus.

Project Activity

See All Activity >

Follow Polymorphic SSR retrieval

Polymorphic SSR retrieval Web Site

Other Useful Business Software

Earn up to 16% annual interest with Nexo.

More flexibility. More control.

Generate interest, access liquidity without selling, and execute trades seamlessly. All in one platform. Geographic restrictions, eligibility, and terms apply.

Get started with Nexo.

Rate This Project

User Reviews

Be the first to post a review of Polymorphic SSR retrieval!

Additional Project Details

Registered

2015-03-06

Report inappropriate content

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Recommended Projects

FLASH
Merge mates from fragments that are shorter than twice the read length
palfinder
pal_finder is a perl script that finds microsatellite repeat elements directly from raw 454 or Illumina paired-end sequencing reads. It then designs PCR primers to amplify these repeat loci (Potentially Amplifiable Loci: PAL).
MutAid
MutAid: Sanger and NGS based pipeline for mutation screening.
scalpel
Genetic variants discovery tool
NGS-TOOLBOX
Handy tools to process/analyze next generation sequencing (NGS) data