The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.

Features

  • Sequence alignment
  • SNV analysis
  • CNV analysis
  • Inter-sample comparison

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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PlaTypUS Web Site

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Additional Project Details

Operating Systems

Linux, BSD, Mac, Windows

Intended Audience

Science/Research, Advanced End Users

Programming Language

MATLAB, Perl, C, Java

Related Categories

MATLAB Bio-Informatics Software, Perl Bio-Informatics Software, C Bio-Informatics Software, Java Bio-Informatics Software

Registered

2011-12-08