PhyloMCL

PhyloMCL is a method degined to detect orthologous groups accurately.

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Last Update: 2020-01-06

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PhyloMCL is a Markov clustering based method designed to detect ortholog groups effectively and efficiently. It employs two rounds of clustering aiming to recover the complex nature of gene duplications generated by polyploidization and single gene duplication events. PhyloMCL is implemented in C++ to promote computing speed for ortholog inference in genome scale.

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2018-12-07

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OrthoMCL
Stand-alone version of OrthoMCL is programmed in PERL, runs in UNIX-like systems. It uses the Markov Clustering Algorithm (MCL) to perform a graph clustering of protein orthologs from multiple eukaryotic genomes.