Download Latest Version PAVED.jar (1.0 MB) Get Updates
Home / Release 1.0 / data
Name Modified Size InfoDownloads / Week
Parent folder
MNAse 2014-10-01
0
MACS 2014-10-01
0
insertSize 2014-10-01
0
FAIRE 2014-10-01
0
CCAT 2014-10-01
0
BAMFilesInsertSize 2014-10-01
0
BAMFile 2014-10-01
0
annotations 2014-10-01
0
distogram 2014-08-05
0
Totals: 9 Items   0 
PROGRAM: PAVED

DESCRIPTION: PAVED-A software suite for the analysis of epigenome-derived next-generation sequencing data

AUTHOR: JAHANGHEER SHAIK Ph.D.

CONTACT: shaik@wusm.wustl.edu

YEAR: 2014

DOCUMENTATION: provided as html pages @ http://peaksandvalleys.sourceforge.net/

INSTALLATION: No installation required. Java 1.5 or higher is required.

COMPILATION: No compilation is required

USAGE: "java -jar PAVED.JAR -h" to get started. The PAVED package is @ https://sourceforge.net/projects/peaksandvalleys/files/Release%201.0/code/

EXAMPLE NGS DATA (Both MNAse-seq and FAIRE-Seq): example data is @ https://sourceforge.net/projects/peaksandvalleys/files/Release%201.0/data/

CITATION: J.S. Shaik, B.A. Anderson and S.M. Beverley, "PAVED-A software suite for the analysis of epigenome-derived next-generation sequencing data", Under Preparation

License Information: Free for academic use. Please contact shaik@wusm.wustl.edu otherwise.
Source: README.txt, updated 2014-08-08