parSRA Files

Portable Framework for the Parallel Execution of Short Read Aligners

Status: Planning

Brought to you by: jgonzalezd

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Name	Modified	Size	InfoDownloads / Week
parSRA_v1.0.zip	2015-07-13	450.9 MB	0
Totals: 1 Item		450.9 MB	0

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CUSHAW3: Accurate Short-read Alignment
CUSHAW3 is an open-source parallelized, sensitive and accurate short-read aligner. This aligner proposes a general approach to properly aligning both easy and hard reads to large genomes such as the human genome. Perform evaluation on alignment quality reals that CUSHAW3 consistently outperforms CUSHAW2, BWA-MEM, Bowtie2 and GEM in terms of single-end and paired-end alignment. Furthermore, our aligner has demonstrated better paired-end alignment performance than Novalign3 for short-reads with high error rates.