OSPS

Organism Specific Probe Selection Tools

Brought to you by: aldrinyim

Downloads: 1 This Week

Last Update: 2013-07-24

Get an email when there's a new version of OSPS

OSPS is a pure JAVA-based program (multiple platforms) aims to facilitate biologists to easily design probes to deplete rRNA in an organism-specific manner. We have demonstrated that the designed probes of 16S rRNAs and 23S rRNAs can effectively remove rRNAs from Mycobacterium smegmatis.

Project Samples

OSPS Screenshot 1

Project Activity

See All Activity >

Follow OSPS

Other Useful Business Software

Forever Free Full-Stack Observability | Grafana Cloud Icon

Forever Free Full-Stack Observability | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of OSPS!

Additional Project Details

Programming Language

Registered

2013-07-09

Report inappropriate content

Forever Free Full-Stack Observability | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Recommended Projects

MicrobiomeUtilities
A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
Big Brother (BB4) monitoring scripts
Adding external probes to the Big Brother (BB4) system and network monitoring program
Dynamic Probes
Dynamic Probes is a linux debugging facility that will operate under the most extreme software conditions. It offers a technique for debugging in both kernel and user space by allowing you to insert "probes" in running programs.
ArrayOligoSelector
ArrayOligoSelector (AOS) systematically designs gene specific long oligo probes for entire genomes. The program optimizes the oligo selections for several parameters, including uniqueness in the genome, internal repeats, self-binding, and GC content.
httprobe
Take a list of domains and probe for working HTTP and HTTPS servers