OptFlux

OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.

Features

SBML compatible (import/export)
CellDesigner layouts compatible (import/export) - add simulation values
Metatool compatible (import/export)
Flat Files compatible (import/export)
Phenotype simulation - FBA / MOMA / ROOM / MFA
Flux Variability Analysis (FVA)
Elementary Modes Analysis (EMA / EFMs)
Bi-level Optimization (OptGene / OptKnock)
Multiobjective Optimization
Simulation/Optimization with Gene-Protein-Reaction (GPR) information
Regulatory Network Simulation / Optimization
Visualization of CellDesigner Layouts (Biovisualizer)

Project Activity

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Science/Research, End Users/Desktop, Engineering

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2010-06-07

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