NoiseRed

Protein alignment noise reduction

Brought to you by: ronnierp

Downloads: 1 This Week

Last Update: 2015-01-18

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The project consists of reading alignments and removing noisy columns that fall under three requirements: 1) more than 50% are indels; 2) more than half of the proteins show unique amino acid in the given column; and, 3) if no amino acid appears more than twice in the column analyzed.

The efficiency is tested by generating trees and comparing them with reference trees. Furthermore, a statistical analysis is performed to infer the suitability of the method.

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2015-01-17

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