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Name Modified Size InfoDownloads / Week
Parent folder
ManualNGSEP_v5.0.0.pdf 2024-07-02 10.1 MB
0
runMapping 2022-06-17 1.2 kB
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runMappingBowtie2 2021-10-01 1.3 kB
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Tutorial.txt 2020-11-01 16.9 kB
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QuickStart.txt 2020-11-01 21.3 kB
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README.txt 2020-11-01 839 Bytes
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yeastDemo_ann_q40_s_fi_I2_noREP_noCNV.vcf.gz 2020-02-19 679.1 kB
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runNGSEP 2020-02-19 512 Bytes
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runGenotyping 2020-02-19 585 Bytes
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calculateReadposStatsPeaks 2020-02-19 252 Bytes
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UserManualNGSEP_V331.pdf 2019-04-26 15.4 MB
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Saccharomyces_cerevisiae.fa 2018-04-14 12.4 MB
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Saccharomyces_cerevisiae_STRs.txt 2018-04-14 2.6 MB
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Saccharomyces_cerevisiae.gff3 2018-04-14 5.7 MB
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Saccharomyces_cerevisiae_repeats.txt 2018-04-14 247.2 kB
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Totals: 15 Items   47.2 MB 0 
NGSEP - Next Generation Sequencing Experience Platform
===========================================================================
Training directory:
===================
Here you can find the documentation for learning how to use NGSEP.

It includes:
	1. User Manual, for the Graphical Interface user
	2. A Quick Start, to get familiar with the pipeline
	3. A Tutorial, to guide you step by step through the whole process

Scripts are also available, to include NGSEP in a production pipeline:
	- runMapping
	- calculateReadposStatsPeaks
	- runNGSEP
	- runGenotyping

And, the sample data for the Tutorial:
	Reference files
	- Saccharomyces_cerevisiae.fa
	- Saccharomyces_cerevisiae_STRs.txt
	- Saccharomyces_cerevisiae.gff3
	- Saccharomyces_cerevisiae_repeats.txt
	
	Output for comparison
	- yeastDemo_ann_q40_s_fi_I2_noREP_noCNV.vcf.gz
Source: README.txt, updated 2020-11-01