MUMmer - Browse /mummer at SourceForge.net

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Name	Modified	InfoDownloads / Week
Parent folder
3.23	2011-12-17	169
3.22	2009-09-21	2
3.21	2009-01-15	0
3.20	2008-07-04	0
3.19	2006-06-29	0
3.18	2005-06-28	0
3.17	2005-05-24	0
Totals: 7 Items		171

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MUMmerGPU
MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.
Vancouver Short Read Analysis Package
This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
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DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.

MUMmer Files