MS2Browser

MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book chapter:

http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc-ms-ms-fragmentation-data-analysis-and-application-to-siderophore-identification

A siderophore structural database assembled for this project can be found alongside the MS2Browser software (.cfw format to be used with ChemBioFinder(TM) ).

NOTE: The program is written for personal use to assist siderophore analysis using high-resolution LC-MS/MS data. Please contact me if you have any questions about its use, bugs, etc.

Features

Small molecule LC-MS/MS data analysis
Fragment-ion and neutral-loss search, MS/MS similarity networks, MS/MS auto-convolution
Visualization of chromatograms and spectra
Analysis of siderophores using an MS/MS auto-convolution approach
Siderophore structural database in ChemBioFinder(TM)

Project Samples

Main user interface of MS2Browser for visualization, pre-processing, and analysis of LC-MS/MS data

Project Activity

See All Activity >

Follow MS2Browser

MS2Browser Web Site

Other Useful Business Software

MongoDB Atlas runs apps anywhere

Deploy in 115+ regions with the modern database for every enterprise.

MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.

Start Free

Rate This Project

User Reviews

Be the first to post a review of MS2Browser!

Additional Project Details

Operating Systems

Windows

Intended Audience

Science/Research

Programming Language

MATLAB

Related Categories

MATLAB Chemistry Software, MATLAB Data Analytics Tool

Registered

2016-02-29

Similar Business Software

Google Cloud BigQuery

BigQuery is a serverless, multicloud data warehouse that simplifies the process of working with all types of data so you can focus on getting valuable business insights quickly. At the core of Google’s data cloud, BigQuery allows you to simplify data integration, cost effectively and securely...

See Software
SDS Manager

SDS Manager is a leading provider of Safety Data Sheet (SDS) management systems, offering one of the largest SDS databases with over 14 million documents available in 25 languages. With SDS Manager, employees can easily access Safety Data Sheets directly from their mobile devices by scanning...

See Software
DbVisualizer

DbVisualizer is one of the world's most popular database editors. With almost 7 million downloads and Pro users in 150 countries worldwide, it won't disappoint you. Free and Pro versions are available. Developers, analysts, and DBAs use it to elevate their SQL experience with modern tools to...

See Software
DashboardFox

Dashboards, codeless reporting, interactive data visualizations, data level security, mobile access, scheduled reports, embedding, sharing via link, and more. DashboardFox is a dashboard and data visualization solution designed for business users with a no-subscription pricing model. Pay...

See Software
icCube

icCube is a Swiss embeddable analytics solution designed for B2B SaaS product and development teams to deeply embed analytic capabilities inside their applications. Dashboards will seamlessly blend into the SaaS solution’s UI and UX experience, while resting on top of icCube’s robust...

See Software
Quaeris

Align analytics to your everyday business workflows. Your business relies on people, data and documents, but the process of using them is broken. QuaerisAI enables seamless downstream workflows across your People, Documents and Data Assets. Use natural language search on data, documents and...

See Software