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Readme.txt 2019-05-09 2.0 kB
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mouseCP.miRNA2gene.txt 2019-05-09 5.9 kB
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mouseCP.miRNA2TF.txt 2019-05-09 3.1 kB
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mouseCP.TF2gene.txt 2019-05-09 19.7 kB
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mouseCP.TF2miRNA.txt 2019-05-09 2.6 kB
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get_model_composite_FFL.h 2019-05-09 4.8 kB
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get_model_miRNA_FFL.c 2019-05-09 3.0 kB
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get_model_miRNA_FFL.h 2019-05-09 4.6 kB
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get_model_TF_FFL.c 2019-05-09 2.8 kB
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get_model_composite_FFL.c 2019-05-09 3.3 kB
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get_model_TF_FFL.h 2019-05-09 4.7 kB
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Totals: 11 Items   56.5 kB 0 
This program (named motifpredictor) is used to identify motifs (miRNA-TF-gene loops) from networks

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INSTALLATION & USAGE

Pre-requisite:
1. Linux/Mac
2. C/C++ compiler (i.e. gcc, g++, dev c++)


Steps:
1. Download codes and data files from https://sourceforge.net/projects/motifpredictor/files/

2. Compile motifpredictor

For Linux/Mac
 LANG=C gcc -Wall get_model_composite_FFL.c  -o get_model_composite_FFL
 LANG=C gcc -Wall get_model_miRNA_FFL.c  -o get_model_miRNA_FFL
 LANG=C gcc -Wall get_model_TF_FFL.c  -o get_model_TF_FFL



3. Run samples

For Linux/Mac

./get_model_TF_FFL  \
-input_TF2miRNA   mouseCP.TF2miRNA.txt \
-input_TF2gene    mouseCP.TF2gene.txt    \
-input_miRNA2TF   mouseCP.miRNA2TF.txt   \
-input_miRNA2gene mouseCP.miRNA2gene.txt  \
-output_file      mouseCP.TF_motif.txt

./get_model_miRNA_FFL  \
-input_TF2miRNA   mouseCP.TF2miRNA.txt \
-input_TF2gene    mouseCP.TF2gene.txt    \
-input_miRNA2TF   mouseCP.miRNA2TF.txt   \
-input_miRNA2gene mouseCP.miRNA2gene.txt  \
-output_file      mouseCP.miRNA_motif.txt

./get_model_composite_FFL  \
-input_TF2miRNA   mouseCP.TF2miRNA.txt \
-input_TF2gene    mouseCP.TF2gene.txt    \
-input_miRNA2TF   mouseCP.miRNA2TF.txt   \
-input_miRNA2gene mouseCP.miRNA2gene.txt  \
-output_file      mouseCP.composite_motif.txt





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Contact Us

Dr Zhongming Zhao, 
Center for Precision Health, 
School of Biomedical Informatics, 
The University of Texas Health Science Center at Houston, 
7000 Fannin Street, Houston, TX 77030, USA 
E-mail: zhongming.zhao@uth.tmc.edu

Mr. Aimin Li, PhD
School of Computer Science and Engineering,
Xi'an University of Technology,
5 South Jinhua Road,
Xi'an, Shaanxi 710048, P.R China
E-mail: liaiminmail@gmail.com

Mr. Aimin Li, PhD
Center for Precision Health, 
School of Biomedical Informatics, 
The University of Texas Health Science Center at Houston, 
Houston, TX 77030, USA 
E-mail: liaiminmail@gmail.com

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Source: Readme.txt, updated 2019-05-09