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Home / COVID19Dataset / Test2
Name Modified Size InfoDownloads / Week
Parent folder
Secoviridae 2020-04-10
0
Rhabdoviridae 2020-04-10
0
Reoviridae 2020-04-10
0
Potyviridae 2020-04-10
0
Picornaviridae 2020-04-10
0
Phenuiviridae 2020-04-10
0
Peribunyaviridae 2020-04-10
0
Flaviviridae 2020-04-10
0
Coronaviridae 2020-04-10
0
Caliciviridae 2020-04-10
0
Bromoviridae 2020-04-10
0
Betaflexiviridae 2020-04-10
0
Totals: 12 Items   0 
1) The sequences obtained from NCBI and Virus-Host-DB are organized into folders Test1-Test6 (corresponding to the computational experiments in the paper), as fasta files.

2) The accession numbers of the 29 sequences from GISAID (28 COVID-19 virus sequences, and 1 betacoronavirus sequence RaTG13) are provided in the file 'GISAIDsequences.txt'.

3) Users can freely register on GISAID and search for/download the sequences using the provided accession numbers.

4) The RaTG13 sequence should be downloaded and placed in the:
 
a) Coronaviridae folder of Test2
b) Betacoronavirus folder of Test3a and Test3b
c) Sarbecovirus folder of Test4, Test5 and Test6

5) The 28 COVID-19 sequences from GISAID should be downloaded and placed in the COVID19 folder of Test5 and Test6.
Source: readme.txt, updated 2020-04-10