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datasets 2012-04-11
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src 2012-04-11
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readme.txt 2012-04-11 1.2 kB
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miRpp.jar 2012-04-11 1.1 MB
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mirpp-manual.pdf 2012-04-11 322.7 kB
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The latest executable version of miRpp is miRpp.jar, you find furthermore an introductionary manual in the base directory

The sources can be found in the src-folder packed in miRpp_v1.tar.gz miRpp was developed in NetBeans IDE 7.0.1. Dependencies: - Java Runtime Environment 1.6 or higher (download from http://www.java.com) - MySQL (download from http://www.mysql.com) - RNAfold from the Vienna Package (download from http://www.tbi.univie.ac.at/RNA/ for Windows users the executable of RNAfold can be dowloaded from http://www.tbi.univie.ac.at/RNA/windoze/

A test dataset can be found in the datasets-folder, packed in sample-datasets.tar.gz containing following files: - testset_genome.fasta containing sample genome sequences (known pre-miRNAs, pseudo-hairpins from coding sequences) from Arabidopsis thaliana - testset_sRNA.fasta containing sample small RNA sequences (mature miRNAs and sRNAs that were used to predict the pseudo-hairpins) from Arabidopsis thaliana - positive_trainset.fasta containing all 201 pre-miRNA for Arabidopsis lyrata in miRBase 18 - negative_trainset.fasta containing 500 pseudo-hairpins from Arabidopsis thaliana coding sequences
Source: readme.txt, updated 2012-04-11