MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the help of a trained bioinformatician.

Features

  • WGS analysis of model organism genomes even on single PCs and notebooks
  • powerful tools for variant filtering and mapping
  • integration into an existing Galaxy installation with a single command
  • example datasets for testing
  • online tutorial and extensive documentation
  • platform-specific bundled distributions (many Linux flavours, OS X) to run and test in a pre-configured Galaxy instance without installation

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

Follow MiModD

MiModD Web Site

Other Useful Business Software
Our Free Plans just got better! | Auth0 Icon
Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
Try free now
Rate This Project
Login To Rate This Project

User Ratings

★★★★★
★★★★
★★★
★★
1
1
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

User Reviews

  • MiModD is an easy-to-use software package being used by our lab to identify mutations in C. elegans. The author is very quick to respond to issues and helped us to get the program up and running for our needs.
  • A very simple and straightforward set of programs that allows the analysis and identification of mutations from whole genome sequence (WGS) data derived from genetically tractable model organisms. The programs come with a well written set of tutorials, that provide step-by-step instructions and assumes only a basic knowledge of the command line. The author was very helpful in helping us install and use this package when we first began using it in to analyse our data.
Read more reviews >

Additional Project Details

Operating Systems

Linux, Mac

Intended Audience

Science/Research, Advanced End Users

User Interface

Web-based, Command-line

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2013-10-19