mimicree2 Files

Genome-wide forward simulations of evolving populations

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Name	Modified	Size	InfoDownloads / Week
Parent folder
mimicree_format_dgrp_snps_X_chromosome.gz	2018-04-03	120.2 MB	0
comeron_sex_specific	2018-04-03	35.9 kB	0
effect_size_1locus_X	2018-04-03	106 Bytes	0
selection_regime_08	2018-04-03	6 Bytes	0
sex-info	2018-04-03	31 Bytes	0
Totals: 5 Items		120.3 MB	0

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Recommended Projects

SimulaTE
SimulaTE allows to simulate arbitrary complex landscapes of transposable elements (TEs). Additionally reads may be simulated using the genomes of all indivdiuals in the population as template. Reads may be simulated using different sequencing technologies (PacBio, Illumina paired-ends) and strategies (sequencing individuals and pooled populations). SimulaTE will greatly aid in evaluating the suitability of different approaches for estimating TE abundance within populations and to test whether given genomic resources, such as a reference genome or a TE database (a fasta file containing consensus sequences of TEs), are suitable for TE identification. Manual https://sourceforge.net/p/simulates/wiki/Home/#manual Walkthrough https://sourceforge.net/p/simulates/wiki/Home/#walkthrough Validation https://sourceforge.net/p/simulates/wiki/Home/#validation
popoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
HEALPix
Data Analysis, Simulations and Visualization on the Sphere
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Genome-wide Microsatellite Analyzing Toward Application: GMATA

mimicree2 Files

Genome-wide forward simulations of evolving populations

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