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miARma-Seq, which stands for miRNA-Seq And RNA-Seq Multiprocess Analysis, is a suite designed to study mRNAs, miRNAs and circRNAs. It is able to perform differential expression analysis, miRNA-mRNA target prediction and functional analysis among others. Most importantly, it can be applied to any sequenced organism, and it can be initiated at any step of the workflow.
As a stand-alone tool, is both easy to install and extremely flexible in terms of its use. It brings together well-established software in a single bundle, allowing a complete analysis from raw data. All the capabilities can be easily and simultaneously enabled at will, regardless the step in the workflow.
Features
- Integrated capabilities that enable data from both miRNA and mRNA expression experiments to be analyzed simultaneously.
- No restrictions regarding the reference organism as it can be used with any reference organism as long as its genome has been sequenced.
- Flexibility in terms of fitting any experimental design, allowing the user to start the analysis at different steps of the pipeline.
- Speed of execution, allowing the pipeline to be executed in a standard computer or in a cluster environment (profiting from its parallelizing properties)
- Reliability, as the tool performs the analysis with the most of the high-quality standard tools available.
- Wide coverage, which not only includes miRNA-Seq and RNA-Seq data analysis to identify miRNAs, mRNAs or circRNAs among others.
- Easy installation, without having to check otherwise tedious requirements that make the analysis more difficult for non-experienced researchers.
- Standard format output files. All output files and results generated with miARmaSeq are in standard formats, like SAM, BAM, PDF, TSV, XLS.
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