MGplacer

Placer metagenomic data onto a phylogeny with 1000's of genomes

Brought to you by: zheminzhou

Add a Review

Downloads: 11 This Week

Last Update: 2016-09-13

Download

Add to Preferred Sources

A rapid and robust method to identify lineage(s) of bacteria in metagenomic data, from a pre-defined phylogeny. Mixed-samples of multiple lineages in the phylogeny can be identified efficiently by iterately removal of assigned reads.

Project Activity

See All Activity >

Follow MGplacer

MGplacer Web Site

Other Useful Business Software

Veeam Data Platform v13.1 - Get Your Free Trial

Secure by design, portable by default. Recover clean, fast, anywhere. Start a free trial.

Try Veeam Data Platform today. Experience the unified platform that's secure by design, portable by default, and proven to recover clean, fast, and anywhere.

Try it Free

Rate This Project

User Reviews

Be the first to post a review of MGplacer!

Additional Project Details

Registered

2014-10-06

Report inappropriate content

$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

Start Free

Recommended Projects

SPA
SPA: a short peptide assembler for metagenomic data
GLUVAB
Genomic Lineages of Uncultured Viruses of Archaea and Bacteria
r8s
Divergence time estimation on phylogenies
SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data.
Taxallnomy
Taxallnomy is a taxonomic database that provides taxonomic lineages according to the ranks used on Linnean classification system (e.g. Kingdom, Phylum, Class etc.). Taxallnomy is based on the NCBI Taxonomy, thus you will find along the taxonomic lineage either taxa originally ranked in NCBI Taxonomy or some unique nodes created by the Taxallnomy algorithm, since some taxonomic ranks are missing in the original taxonomic lineage (for example, the Superclass rank is missing on the Homo sapiens lineage).