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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| README | 2013-02-11 | 2.7 kB | |
| fast-tfva_13_01_14.tgz | 2013-02-11 | 13.5 MB | |
| fast-tfva_12_12_03.tgz | 2013-02-11 | 13.5 MB | |
| fast-tfva_12_11_27.tgz | 2013-02-11 | 13.5 MB | |
| fast-tfva_12_11_13.tgz | 2013-02-11 | 13.5 MB | |
| fast-tfva_12_2_27.tgz | 2013-02-11 | 14.2 MB | |
| Totals: 6 Items | 68.2 MB | 0 |
fast-tfva 2.0 ============= fast-tfva is a tool for fast thermodynamic constrained flux-variability analysis. It is written as a C++ plugin script for Matlab. Copyright (C) 2012 Arne Müller <arne.mueller@fu-berlin.de> This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. A Remark on Version 2.0 ======================= fast-tfva 2.0 is a complete rewrite. It is * does not necessarily depend on libSBML * easier to install * easier to extend * constraints on metabolite concentrations are supported * additional constraints can easily be added when using the C++ library Installation of fast-tfva ========================= !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! This instruction is designed for Linux and may also work for other UNIX-type systems. For Windows you will probably have to adjust some configura tions. (If you have an install instruction for Windows, please send them to me!) !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Fast-tfva 2.0 uses: * SCIP Optimization Suite - http://scip.zib.de Optionally you can link in * libSBML - http://sbml.org/Software/libSBML * Matlab Without SCIP, you won't be able to run fast-tfva. SCIP is open-source. See its webpage for lincensing-details. On university computers it is usually the case that the user does not have root access. Hence, the installation procedure is designed to work also with non-root access. After you have installed all the third-party dependencies (see third_party/README for instructions), you simply have to call make to build the fast tfva. If you have no matlab dependencies installed, call make MATLAB=off If you have no sbml dependencies installed, call make SBML=off Those two options can also be intercombined. Per default, usage of Matlab and SBML is activated. Testing of fast-tfva ==================== If you compiled fast-tfva with Matlab support, you can run a test case (tfva on E coli iAF1260) by calling make test ====================== DONE - CONGRATULATIONS ====================== If you have problems with installing fast-tfva, you can send me an email: arne.mueller[at]fu-berlin.de