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MA prediction.zip (10.3 MB)
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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| MAdetection | 2017-04-01 | ||
| MA prediction.zip | 2017-04-01 | 10.3 MB | |
| LentiMATWSVMmodel.mat | 2017-04-01 | 1.1 MB | |
| LentiMATPWM.mat | 2017-04-01 | 1.4 kB | |
| Lentivirus p17 Term.xlsx | 2017-04-01 | 2.1 MB | |
| README.txt | 2017-04-01 | 463 Bytes | |
| Lentivirus.m | 2017-04-01 | 12.8 kB | |
| Lentivirus p17 Intact.xlsx | 2017-04-01 | 2.5 MB | |
| Lentivirus p17 Init.xlsx | 2017-04-01 | 2.0 MB | |
| LentiMATRFmodel.mat | 2017-04-01 | 1.0 MB | |
| LentiMAIWSVMmodel.mat | 2017-04-01 | 1.5 MB | |
| LentiMAIRFmodel.mat | 2017-04-01 | 1.2 MB | |
| GammaMATWSVMmodel.mat | 2017-04-01 | 297.0 kB | |
| LentiMAIPWM.mat | 2017-04-01 | 1.3 kB | |
| GammaMATRFmodel.mat | 2017-04-01 | 190.2 kB | |
| GammaMATPWM.mat | 2017-04-01 | 1.0 kB | |
| GammaMAScanByRFWSVM.m | 2017-04-01 | 5.3 kB | |
| GammaMAIRFmodel.mat | 2017-04-01 | 165.3 kB | |
| GammaMAIWSVMmodel.mat | 2017-04-01 | 278.5 kB | |
| Gamma MA Term.xlsx | 2017-04-01 | 93.0 kB | |
| GammaMAIPWM.mat | 2017-04-01 | 861 Bytes | |
| Gamma MA Intact.xlsx | 2017-04-01 | 110.2 kB | |
| Gamma MA Init.xlsx | 2017-04-01 | 118.0 kB | |
| DPPS.xls | 2017-04-01 | 17.9 kB | |
| DeltaMATWSVMmodel.mat | 2017-04-01 | 117.1 kB | |
| DeltaMATRFmodel.mat | 2017-04-01 | 83.9 kB | |
| DeltaMAScanByRFWSVM.m | 2017-04-01 | 5.5 kB | |
| DeltaMATPWM.mat | 2017-04-01 | 604 Bytes | |
| DeltaMAIWSVMmodel.mat | 2017-04-01 | 87.9 kB | |
| DeltaMAIRFmodel.mat | 2017-04-01 | 95.1 kB | |
| DeltaMAIPWM.mat | 2017-04-01 | 653 Bytes | |
| Delta p19 Term.xlsx | 2017-04-01 | 42.1 kB | |
| Delta p19 Intact.xlsx | 2017-04-01 | 51.3 kB | |
| Delta p19 Init.xlsx | 2017-04-01 | 51.0 kB | |
| BetaMATWSVMmodel.mat | 2017-04-01 | 100.7 kB | |
| BetaMATRFmodel.mat | 2017-04-01 | 45.1 kB | |
| BetaMATPWM.mat | 2017-04-01 | 517 Bytes | |
| BetaMAIWSVMmodel.mat | 2017-04-01 | 85.7 kB | |
| BetaMAScanByRFWSVM.m | 2017-04-01 | 5.5 kB | |
| BetaMAIRFmodel.mat | 2017-04-01 | 8.4 kB | |
| Beta p10 Term.xlsx | 2017-04-01 | 32.0 kB | |
| BetaMAIPWM.mat | 2017-04-01 | 558 Bytes | |
| Beta p10 Intact.xlsx | 2017-04-01 | 35.5 kB | |
| Beta p10 Init.xlsx | 2017-04-01 | 30.7 kB | |
| AlphaMATWSVMmodel.mat | 2017-04-01 | 69.2 kB | |
| AlphaMATRFmodel.mat | 2017-04-01 | 22.5 kB | |
| AlphaMATPWM.mat | 2017-04-01 | 347 Bytes | |
| AlphaMAScanByRFWSVM.m | 2017-04-01 | 5.5 kB | |
| AlphaMAIRFmodel.mat | 2017-04-01 | 39.4 kB | |
| AlphaMAIWSVMmodel.mat | 2017-04-01 | 38.4 kB | |
| Alpha MA Term.xlsx | 2017-04-01 | 38.7 kB | |
| AlphaMAIPWM.mat | 2017-04-01 | 293 Bytes | |
| Alpha MA Init.xlsx | 2017-04-01 | 37.9 kB | |
| Alpha MA Intact.xlsx | 2017-04-01 | 45.1 kB | |
| Totals: 54 Items | 24.2 MB | 0 |
Source code for MA detection on different type of retroviruses are included (*.m files). Training data and models are also included. The matlab code could work on matlab enviroments with LibSVM (available at http://www.csie.ntu.edu.tw/~cjlin/libsvm/)and RF (available at https://cran.r-project.org/web/packages/randomForest/.) The prediction results would be stored in variables with name of "bestMAIputative" and "bestMATputative" after running the programs.
