LiDSiM

LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes.

For more details about LiDSiM and its functioning, please see

"Estimating the Computational Limits of Detection of Microbial Non-Model Organisms"
Mathias Kuhring and Bernhard Y. Renard
(http://onlinelibrary.wiley.com/doi/10.1002/pmic.201400598/abstract)

PLEASE NOTE, it is recommended to read the paper and the readme.txt file before using LiDSiM.

Project Activity

See All Activity >

License

BSD License

Follow LiDSiM

LiDSiM Web Site

Other Useful Business Software

Empowering Companies To Excel In Safety Data Sheet Compliance

For any organization using chemicals that require Safety Data Sheets

Effortless setup and maintenance: Simplified management and seamless online access to safety data sheets for your team

Learn More

Rate This Project

User Reviews

Be the first to post a review of LiDSiM!

Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Java, S/R

Related Categories

Java Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2014-12-15

Similar Business Software

OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
G6GFINDR System

g6gTech, Inc. is a software development company that creates in-depth search products in the bioinformatics and artificial intelligence (AI) fields. We have recently changed our name from the G6G Consulting Group to emphasize our focus on creating products. Powered by semantic annotation, the...

See Software
Pluto

Since its founding in 2021 from the Wyss Institute at Harvard University, Pluto has become a trusted partner of life sciences organizations around the country ranging from biotech start-ups to public biopharma companies. Our cloud-based platform gives scientists the ability to manage all of...

See Software
ruffus

Ruffus is a computation pipeline library for python. It is open-sourced, powerful and user-friendly, and widely used in science and bioinformatics. Ruffus is designed to allow scientific and other analyses to be automated with the minimum of fuss and the least effort. Suitable for the simplest...

See Software
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
Bioconductor

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...

See Software