Lep-MAP3 Files

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Name	Modified	Size	InfoDownloads / Week
binary+code.zip	2025-03-12	424.8 kB	8
binary.zip	2025-03-12	241.7 kB	2
scripts.zip	2024-02-20	11.9 kB	0
README	2022-06-15	952 Bytes	0
simulated_data.zip	2016-10-12	58.6 MB	3
simulated_scripts.zip	2016-10-12	27.9 kB	0
Totals: 6 Items		59.3 MB	13

Lep-MAP3 (v. 0.5)

Linkage map construction suite

See Lep-MAP3 wiki on sourceforge for documentation.

The files included:

simulated_data.zip    : Used simulated data, commands to run and evaluate MSTmap and Lep-MAP3 on the data
simulated_scripts.zip : Only the scripts to generate the simulated data
binary+code.zip       : Lep-MAP3 binaries + source code
binary.zip            : Lep-MAP3 binaries only

How to run Lep-MAP3 (compiled classes located in the folder bin):

java -cp bin/ ParentCall2
java -cp bin/ Filtering2
java -cp bin/ SeparateChromosomes2
java -cp bin/ JoinSingles2All
java -cp bin/ OrderMarkers2
java -cp bin/ LMPlot
java -cp bin/ Pileup2Likelihoods
(java -cp bin/ OutputData)

These are now removed
#java -cp bin/ SeparateIdenticals
#java -cp bin/ JoinSingles2Identicals
#java -cp bin/ ShortPath


How to compile Lep-MAP3:
javac src/*.java -d bin/


(C) 2016-2022, Pasi Rastas, University of Cambridge and University of Helsinki

Source: README, updated 2022-06-15

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