Download Latest Version binary+code.zip (420.9 kB) Get Updates
Home
Name Modified Size InfoDownloads / Week
binary+code.zip 2024-02-28 420.9 kB
14 14 weekly downloads
binary.zip 2024-02-28 239.2 kB
0
scripts.zip 2024-02-20 11.9 kB
2 2 weekly downloads
README 2022-06-15 952 Bytes
2 2 weekly downloads
simulated_data.zip 2016-10-12 58.6 MB
0
simulated_scripts.zip 2016-10-12 27.9 kB
0
Totals: 6 Items   59.3 MB 18 
Lep-MAP3 (v. 0.5)

Linkage map construction suite

See Lep-MAP3 wiki on sourceforge for documentation.

The files included:

simulated_data.zip    : Used simulated data, commands to run and evaluate MSTmap and Lep-MAP3 on the data
simulated_scripts.zip : Only the scripts to generate the simulated data
binary+code.zip       : Lep-MAP3 binaries + source code
binary.zip            : Lep-MAP3 binaries only

How to run Lep-MAP3 (compiled classes located in the folder bin):

java -cp bin/ ParentCall2
java -cp bin/ Filtering2
java -cp bin/ SeparateChromosomes2
java -cp bin/ JoinSingles2All
java -cp bin/ OrderMarkers2
java -cp bin/ LMPlot
java -cp bin/ Pileup2Likelihoods
(java -cp bin/ OutputData)

These are now removed
#java -cp bin/ SeparateIdenticals
#java -cp bin/ JoinSingles2Identicals
#java -cp bin/ ShortPath


How to compile Lep-MAP3:
javac src/*.java -d bin/


(C) 2016-2022, Pasi Rastas, University of Cambridge and University of Helsinki
Source: README, updated 2022-06-15